Issues

• [ALERT] Access to NVIDIA's Self-Hosted Runners is Expiring

  nvidia-runners
  NVIDIA-BioNeMo/bionemo-recipes#1726 · Filter by author nvidia-runner-mgmt opened on Aug 30, 2026

• Flaky test: CUDA error: initialization error in DataLoader workers (esm2_native_te)

  bugESM2
  NVIDIA-BioNeMo/bionemo-recipes#1698 · Filter by author svc-bionemo opened on Jul 29, 2026

• [Feature] Inference-side PTQ / weight-compression recipe for bio models (ESM-2 / Geneformer / Evo2) — wanted? where should it live?

  NVIDIA-BioNeMo/bionemo-recipes#1681 · Filter by author huthvincent opened on Jul 11, 2026

• [BUG] Evo2 doesnt work in Bionemo V3.0.0

  bug
  NVIDIA-BioNeMo/bionemo-recipes#1669 · Filter by author TaoDFang opened on Jul 1, 2026
  1

• [Feature] Reflect vortex prefill improvements from PR 77

  NVIDIA-BioNeMo/bionemo-recipes#1647 · Filter by author jstjohn opened on Jun 16, 2026

• [Feature] Support .obsm arrays in SingleCellMemMapDataset for spatial transcriptomics

  NVIDIA-BioNeMo/bionemo-recipes#1577 · Filter by author YonghaoZhao722 opened on May 21, 2026

• MFU tracking: pad_to_multiple_of path inflates useful-work Σ(Lᵢ²) by the mock-sequence contribution

  NVIDIA-BioNeMo/bionemo-recipes#1561 · Filter by author gagank1 opened on Apr 24, 2026

• [Feature] Support loading & writing zarr files in scdl

  NVIDIA-BioNeMo/bionemo-recipes#1560 · Filter by author Zethson opened on Apr 22, 2026

• [BUG] Investigate non-determinism in evo2 recipe data preprocessing script and/or test

  bug
  NVIDIA-BioNeMo/bionemo-recipes#1493 · Filter by author jstjohn opened on Mar 4, 2026
  1

• Remove CUDA Sync Workaround in Evo2 Training Script

  NVIDIA-BioNeMo/bionemo-recipes#1301 · Filter by author gagank1 opened on Oct 31, 2025
  3

• [BUG] Incorrect documentation for Continuous Flow matching augmentation

  bug
  NVIDIA-BioNeMo/bionemo-recipes#1272 · Filter by author metric-space opened on Oct 24, 2025

• [BUG] EVO2 7b_arc_longcontext can't use context parallelism (2 GPUs) for long sequence prediction: shape mismatch

  bug
  NVIDIA-BioNeMo/bionemo-recipes#1268 · Filter by author Oblynx opened on Oct 22, 2025

• [Feature] Tensor + Sequence parallel test coverage for evo2 inference.

  NVIDIA-BioNeMo/bionemo-recipes#1243 · Filter by author jstjohn opened on Oct 10, 2025

• [Feature] Can I use bionemo framework to extract the embeddings of evo2_40b model？

  NVIDIA-BioNeMo/bionemo-recipes#1200 · Filter by author fengxy-03 opened on Sep 28, 2025
  2

• Add a classification / regression finetuning head to evo2

  NVIDIA-BioNeMo/bionemo-recipes#1170 · Filter by author MidAtBest opened on Sep 22, 2025
  8

• [Feature] Support batched generation (inference) in evo2.

  NVIDIA-BioNeMo/bionemo-recipes#1152 · Filter by author jstjohn opened on Sep 16, 2025

• [BUG] Evo2 finetune with LoRA does not work

  bugEvo2
  NVIDIA-BioNeMo/bionemo-recipes#1136 · Filter by author dorotat-nv opened on Sep 9, 2025
  9

  

• Obsolete references to --experiment-dir removed evo2 parameter

  NVIDIA-BioNeMo/bionemo-recipes#1128 · Filter by author MaozGelbart opened on Sep 8, 2025
  1

• [Feature] Highlight contribution requirements to make contributing easier.

  NVIDIA-BioNeMo/bionemo-recipes#1004 · Filter by author edawson opened on Jul 28, 2025
  1

• How to Transfer the Evo2-Bionemo checkpoint to the pytorch version and load it locally

  NVIDIA-BioNeMo/bionemo-recipes#967 · Filter by author a96123155 opened on Jul 2, 2025
  8

• Evo2 distributed checkpoint to huggingface conversion

  NVIDIA-BioNeMo/bionemo-recipes#920 · Filter by author not-a-feature opened on Jun 4, 2025
  7

  

• [Feature] Replace all instances of TimingCallback with DeltaTimingCallback to avoid global_step re-use

  NVIDIA-BioNeMo/bionemo-recipes#917 · Filter by author jstjohn opened on Jun 3, 2025
  1

• Try out NBTest: A smarter tool for testing jupyter notebooks

  NVIDIA-BioNeMo/bionemo-recipes#882 · Filter by author ElaineYao opened on May 16, 2025
  5

• [Feature] Add Regressor Head Option to Evo2 Fine-Tuning Script for Numerical Label Prediction

  enhancement
  NVIDIA-BioNeMo/bionemo-recipes#881 · Filter by author gabenavarro opened on May 15, 2025
  12

  

• [BUG] Evo2 training does not work with tp>1 when num_attention_heads is not divisible by tp

  bugEvo2
  NVIDIA-BioNeMo/bionemo-recipes#814 · Filter by author dorotat-nv opened on Apr 9, 2025
  2