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1. weigertlab/spotiflow weigertlab/spotiflow Public

   Accurate and efficient spot detection for microscopy data

   Python 133 19

2. weigertlab/muvit weigertlab/muvit Public

   Official implementation of MuViT (CVPR 2026), a ViT-based architecture for multi-scale modelling of gigapixel microscopy images.

   Python 42 3

3. AI-sandbox/neural-admixture AI-sandbox/neural-admixture Public

   Rapid population clustering with autoencoders

   Python 89 11

4. weigertlab/napari-spotiflow weigertlab/napari-spotiflow Public

   Spotiflow plugin for napari

   Python 18 1