fix: apply-setter and transformer should ignore non-k8s-resource for kustomize paramterization

[ericzzzzzzz]

Fixes: #9239

• kustomize parameterization doesn't work when having dependent files that are not k8s resources as apply-setters and other krm functions should only be applied to k8s resources, hence skipping applying those functions when mirroring kustomization files

[codecov]

Codecov Report

Attention: 295 lines in your changes are missing coverage. Please review.

Comparison is base (290280e) 70.48% compared to head (48c42a5) 63.62%.
Report is 1087 commits behind head on main.

Files	Patch %	Lines
cmd/skaffold/app/cmd/exec.go	16.32%	40 Missing and 1 partial ⚠️
cmd/skaffold/app/cmd/filter.go	47.27%	22 Missing and 7 partials ⚠️
cmd/skaffold/app/cmd/lsp.go	28.12%	23 Missing ⚠️
cmd/skaffold/app/cmd/verify.go	23.33%	23 Missing ⚠️
cmd/skaffold/app/cmd/fix.go	51.16%	17 Missing and 4 partials ⚠️
cmd/skaffold/app/cmd/inspect_job_manifest_paths.go	60.00%	15 Missing and 1 partial ⚠️
cmd/skaffold/app/cmd/inspect_namespaces.go	50.00%	13 Missing and 1 partial ⚠️
...md/skaffold/app/cmd/inspect_config_dependencies.go	45.83%	12 Missing and 1 partial ⚠️
cmd/skaffold/app/cmd/lint.go	42.85%	12 Missing ⚠️
cmd/skaffold/app/cmd/inspect_build_env.go	60.71%	11 Missing ⚠️
... and 21 more

Additional details and impacted files

@@            Coverage Diff             @@
##             main    #9240      +/-   ##
==========================================
- Coverage   70.48%   63.62%   -6.86%     
==========================================
  Files         515      632     +117     
  Lines       23150    32600    +9450     
==========================================
+ Hits        16317    20743    +4426     
- Misses       5776    10259    +4483     
- Partials     1057     1598     +541     

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