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1. tskit-dev/msprime tskit-dev/msprime Public

   Simulate ARGs and genomic sequence data using population genetic models

   Python 217 93

2. tskit-dev/tskit tskit-dev/tskit Public

   Population-scale Ancestral Recombination Graph (ARG) library

   Python 187 84

3. tskit-dev/tsinfer tskit-dev/tsinfer Public

   Infer a tree sequence from genetic variation data.

   Python 64 18

4. sgkit-dev/bio2zarr sgkit-dev/bio2zarr Public

   Convert bioinformatics file formats to Zarr

   Python 47 13

5. sgkit-dev/vcztools sgkit-dev/vcztools Public

   bcftools-compatible querying and format conversion for VCF Zarr

   Python 26 6