Memory-efficient single-cell analysis in Python. Stream RNA, ATAC, CITE-seq and multi-omics from local or remote Zarr stores, from laptop to atlas scale, with reusable fingerprinted results.
Adding support for provenance and uncertainty management to PostgreSQL databases
Persist is a JupyterLab extension to enable persistent interactive visualizations in JupyterLab notebooks.
Efficiently design and manage flexible workflows with AiiDA, featuring an interactive GUI, checkpoints, provenance tracking, and remote execution capabilities.
Nextflow plugin to render provenance reports for pipeline runs. Supports standard formats such as BioCompute Object and Workflow Run RO-Crate.
Agentic SWMM is an automated, auditable, and memory-informed framework for reproducible stormwater modelling, integrating QGIS and EPA SWMM through the aiswmm runtime, reusable Skills, and MCP interfaces, with QA verification, provenance tracking, calibration support, and Codex, Hermes, Claude code as well as OpenClaw compatibility
A Library of UI Control Elements to Track and Dynamically Overlay Analytic Provenance
Build provenance-aware higher-order knowledge graphs and native hypergraphs from documents, with validation, semantic search, and offline visualization.
Authorization, delegation, provenance, and verifiable-audit engine for AI agents. MCP adapter published.
Parent repository for equivalence-aware database research — QuandleDB, VeriSimDB, Lithoglyph, Glyphbase, and typed-trace storage experiments
Backend with the purpose of capturing data provenance and metadata of a preprocessing Pipeline
Linked frozen computations
Maintain an electronic lab book for computational research
A reasoning harness for human-AI collaboration. Preserves what's understood, not just what's said. Open-source skill for Claude Projects. Patent pending.
Database recovery through cross-modal constraint propagation — 8 modalities as witnesses, progressive type ratchet, drift-to-zero convergence
CVE mitigation lifecycle — from disclosure to verified remediation with reachability analysis and formal soundness
Git-backed flat-file data store for VeriSimDB — scan results, dispatch logs, recipes, and patterns
Automated matching between online art auctions and archives of lost artworks.
Augment any database with VeriSimDB octad capabilities — drift detection, provenance, temporal versioning, modality overlays
The PRovenance Infomation in MAterials Science (PRIMA) Ontology
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